2023
- Exploring the crop epigenome: a comparison of DNA methylation profiling techniques. Frontiers in Plant Science 14, 2023 more… BibTeX Full text ( DOI )
- Stochasticity in gene body methylation. Current Opinion in Plant Biology 75, 2023, 102436 more… BibTeX Full text ( DOI )
- <scp>DNA</scp> methylation remodeling in <scp>F1</scp> hybrids. The Plant Journal, 2023 more… BibTeX Full text ( DOI )
- Editorial: DNA methylation in plants associated with abiotic stress, volume II. Frontiers in Plant Science 14, 2023 more… BibTeX Full text ( DOI )
- Improved inference of population histories by integrating genomic and epigenomic data. bioRxiv, 2023, more… BibTeX
- An evolutionary epigenetic clock in plants. Science 381 (6665), 2023, 1440-1445 more… BibTeX Full text ( DOI )
2022
- Mass spectrometry-based draft of the mouse proteome. Nature Methods 19 (7), 2022, 803-811 more… BibTeX Full text ( DOI )
- Molecular properties of epimutation hotspots. Nature Plants 8 (2), 2022, 146-156 more… BibTeX Full text ( DOI )
- MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data. Quantitative Plant Biology 3, 2022 more… BibTeX Full text ( DOI )
- Parental pericentromeric methylation status drives methylome remodelling and heterosis in epigenetic hybrids. bioRxiv, 2022, more… BibTeX
- Predicting 3D chromatin interactions from DNA sequence using Deep Learning. Computational and Structural Biotechnology Journal 20, 2022, 3439-3448 more… BibTeX Full text ( DOI )
2021
- Region-level epimutation rates in Arabidopsis thaliana. Heredity 127 (2), 2021, 190-202 more… BibTeX Full text ( DOI )
- Epigenomics in trees: decoding the plastic lives of mangroves. New Phytologist 233 (5), 2021, 1971-1973 more… BibTeX Full text ( DOI )
- Epigenetics for Crop Improvement in Times of Global Change. Biology 10 (8), 2021, 766 more… BibTeX Full text ( DOI )
- Recursive Convolutional Neural Networks for Epigenomics. 2020 25th International Conference on Pattern Recognition (ICPR), IEEE, 2021 more… BibTeX Full text ( DOI )
- Epimutations Define a Fast-Ticking Molecular Clock in Plants. Trends in Genetics 37 (8), 2021, 699-710 more… BibTeX Full text ( DOI )
- Heterochromatin is a quantitative trait associated with spontaneous epiallele formation. Nature Communications 12 (1), 2021 more… BibTeX Full text ( DOI )
2020
- Epigenetics: Switching Genes On and Off. Frontiers for Young Minds 8, 2020 more… BibTeX Full text ( DOI )
- A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa. Genome Biology 21 (1), 2020 more… BibTeX Full text ( DOI )
- Mass-spectrometry-based draft of the Arabidopsis proteome. Nature 579 (7799), 2020, 409-414 more… BibTeX Full text ( DOI )
- MethylStar: A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing data. BMC Genomics 21 (1), 2020 more… BibTeX Full text ( DOI )
- AlphaBeta: Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants. bioRxiv, 2020 more… BibTeX Full text ( DOI )
2019
- Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis. eLife 8, 2019 more… BibTeX Full text ( DOI )
- The somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa. bioRxiv, 2019 more… BibTeX Full text ( DOI )
- DNA methylation makes mutational history. Nature Plants 5 (8), 2019, 772-773 more… BibTeX Full text ( DOI )
- The prevalence, evolution and chromatin signatures of plant regulatory elements. Nature Plants 5 (12), 2019, 1250-1259 more… BibTeX Full text ( DOI )
- Widespread long-range cis-regulatory elements in the maize genome. Nature Plants 5 (12), 2019, 1237-1249 more… BibTeX Full text ( DOI )
- Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation. eLife 8, 2019 more… BibTeX Full text ( DOI )
2018
- Spontaneous epimutations in plants. New Phytologist 221 (3), 2018, 1253-1259 more… BibTeX Full text ( DOI )
- Epigenetic mapping of the <i>Arabidopsis</i> metabolome reveals mediators of the epigenotype-phenotype map. Genome Research 29 (1), 2018, 96-106 more… BibTeX Full text ( DOI )
- METHimpute: imputation-guided construction of complete methylomes from WGBS data. BMC Genomics 19 (1), 2018 more… BibTeX Full text ( DOI )
2017
- Learning sequence patterns of AGO-sRNA affinity from high-throughput sequencing libraries to improve in silico functional small RNA detection and classification in plants. bioRxiv, 2017, more… BibTeX
- Parental DNA Methylation States Are Associated with Heterosis in Epigenetic Hybrids. Plant Physiology 176 (2), 2017, 1627-1645 more… BibTeX Full text ( DOI )
- Computational tools for plant small RNA detection and categorization. Briefings in Bioinformatics, 2017 more… BibTeX Full text ( DOI )
- Small RNAs Reflect Grandparental Environments in Apomictic Dandelion. Molecular Biology and Evolution 34 (8), 2017, 2035-2040 more… BibTeX Full text ( DOI )
2016
- chromstaR: Tracking combinatorial chromatin state dynamics in space and time. bioRxiv, 2016, more… BibTeX
- Quantitative Trait Locus Analysis of Mating Behavior and Male Sex Pheromones in Nasonia Wasps. G3&#58; Genes|Genomes|Genetics 6 (6), 2016, 1549-1562 more… BibTeX Full text ( DOI )
- Genetic sources of population epigenomic variation. Nature Reviews Genetics 17 (6), 2016, 319-332 more… BibTeX Full text ( DOI )
- Methylome evolution in plants. Genome Biology 17 (1), 2016 more… BibTeX Full text ( DOI )
2015
- Signatures of Dobzhansky–Muller Incompatibilities in the Genomes of Recombinant Inbred Lines. Genetics 202 (2), 2015, 825-841 more… BibTeX Full text ( DOI )
- Rate, spectrum, and evolutionary dynamics of spontaneous epimutations. Proceedings of the National Academy of Sciences 112 (21), 2015, 6676-6681 more… BibTeX Full text ( DOI )